deps

LabBook.org

@@ -493,3 +493,133 @@ popd
 #+END_SRC
 
 * 2019-11-22 Drafting a reproducible workflow
+* 2020-04-27 Reinstall tupi2
+** 1. Install alibuild
+Original instructions from here:
+
+https://alice-doc.github.io/alice-analysis-tutorial/building/custom.html
+
+In my box:
+
+#+begin_src bash :results output :session :exports both
+export PYTHONUSERBASE="/SSD2/schnorr/New_2020/python/"
+export PATH="$PYTHONUSERBASE/bin:$PATH"
+rm -rf $PYTHONUSERBASE
+pip install alibuild --upgrade --user
+#+END_SRC
+
+** 2. Initialize AliPhysics
+
+#+begin_src bash :results output :session :exports both
+export PYTHONUSERBASE="/SSD2/schnorr/New_2020/python/"
+export PATH="$PYTHONUSERBASE/bin:$PATH"
+BASE=/SSD2/schnorr/New_2020/ALICE/
+mkdir -p $BASE
+pushd $BASE
+aliBuild init AliPhysics@master
+popd
+#+END_SRC
+** 3. Verify dependencies
+
+Make sure aliDoctor reports no "ERROR" messages.
+
+#+begin_src bash :results output :session :exports both
+export PYTHONUSERBASE="/SSD2/schnorr/New_2020/python/"
+export PATH="$PYTHONUSERBASE/bin:$PATH"
+aliDoctor AliPhysics
+#+END_SRC
+
+In my relatively fresh Debian box, I had to install:
+
+#+begin_src shell :results output
+sudo apt install libglu1-mesa-dev libperl-dev libxpm-dev libxext-dev libx11-dev libxft-dev libgsl-dev
+
+sudo apt install libssl-dev
+
+sudo apt install cmake autoconf automake autopoint texinfo gettext libtool libtool-bin pkg-config swig
+
+sudo apt install libczmq-dev libyaml-cpp-dev
+
+sudo apt install libz4-dev
+
+sudo apt install libfreetype6-dev
+
+sudo apt install curl libcurl4-gnutls-dev build-essential gfortran cmake xorg-dev libglu1-mesa-dev libfftw3-dev libxml2-dev git unzip autoconf automake autopoint texinfo gettext libtool libtool-bin pkg-config bison flex libperl-dev libbz2-dev swig liblzma-dev libnanomsg-dev libyaml-cpp-dev rsync lsb-release unzip environment-modules libglfw3-dev
+
+sudo apt install libfabric-dev
+#+end_src
+
+** 4. (optional) Deinstall dependencies
+
+#+begin_src shell :results output
+sudo apt purge \
+     libglu1-mesa-dev \
+     libperl-dev \
+     libxpm-dev \
+     libxext-dev \
+     libx11-dev \
+     libxft-dev \
+     libgsl-dev \
+     libssl-dev \
+     libczmq-dev libyaml-cpp-dev \
+     libfreetype6-dev \
+     libcurl4-gnutls-dev \
+     xorg-dev \
+     libglu1-mesa-dev \
+     libfftw3-dev \
+     libxml2-dev \
+     autoconf automake autopoint \
+     texinfo gettext libtool libtool-bin \
+     pkg-config \
+     bison flex \
+     libperl-dev \
+     libbz2-dev \
+     liblzma-dev \
+     libnanomsg-dev \
+     libyaml-cpp-dev \
+     environment-modules libglfw3-dev \
+     libfabric-dev
+#+end_src
+
+** 5. Reinstall only the bare minimum
+
+#+begin_src shell :results output
+sudo apt install \
+     libglu1-mesa-dev \
+     libbz2-dev \
+     liblzma-dev \
+     curl \
+     libcurl4-gnutls-dev \
+     libxpm-dev libxext-dev libx11-dev libxft-dev
+#+end_src
+
+For a more complete installation
+
+#+begin_src shell :results output
+sudo apt install \
+     libglu1-mesa-dev \
+     libperl-dev \
+     libxpm-dev \
+     libxext-dev \
+     libx11-dev \
+     libxft-dev \
+     libgsl-dev \
+     libssl-dev \
+     libczmq-dev libyaml-cpp-dev \
+     libfreetype6-dev \
+     xorg-dev \
+     libglu1-mesa-dev \
+     libfftw3-dev \
+     libxml2-dev \
+     autoconf automake autopoint \
+     texinfo gettext libtool libtool-bin \
+     pkg-config \
+     bison flex \
+     libperl-dev \
+     libbz2-dev \
+     liblzma-dev \
+     libnanomsg-dev \
+     libyaml-cpp-dev \
+     environment-modules libglfw3-dev \
+     libfabric-dev
+#+end_src